PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g08360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 271aa    MW: 30397.3 Da    PI: 9.063
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g08360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.9e-1187138147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 
                      +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w+++
   Vang03g08360.1  87 KQKWTAEEEAALKAGVIKHGVGKWRTILKDPEfnnvlYLRSNVDLKDKWRNL 138
                      79***********************************88***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.21E-1684153IPR009057Homeodomain-like
SMARTSM007173.5E-786141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-1386138IPR009057Homeodomain-like
PfamPF002495.9E-887138IPR001005SANT/Myb domain
PROSITE profilePS500907.37587139IPR017877Myb-like domain
CDDcd116602.03E-2088138No hitNo description
SMARTSM005266.8E-8191256IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.602193270IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467859.8E-13194254IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-11196254IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005387.9E-8197254IPR005818Linker histone H1/H5, domain H15
CDDcd000731.38E-10200253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
LSYFLFVVYR YRIHLLNAQV GSLFLLGHLA RDAIETGDLR SPISHLSNLH QIVSSLFQLR  60
AKVDAYVVYI CLPAESASDK LVMGAPKQKW TAEEEAALKA GVIKHGVGKW RTILKDPEFN  120
NVLYLRSNVD LKDKWRNLSV MANGWSSREK SRLAVRRVHH TPKQDEHSMS ITPVAPSDED  180
IVDHDCICFT LFTLYSLDKL IMEAITSLKE NGGSNKTAIA AFIEDQYWAL PDLKRMLSAK  240
LKFLTASGKL IKVSPCLGDY SEFLGLKMSL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-119AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147429.11e-109hypothetical protein PHAVU_006G123700g
RefseqXP_007147427.11e-109hypothetical protein PHAVU_006G123700g
RefseqXP_007147428.11e-109hypothetical protein PHAVU_006G123700g
SwissprotQ8VWK46e-76TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A0L9VDL01e-110A0A0L9VDL0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S4H01e-109A0A0S3S4H0_PHAAN; Uncharacterized protein
STRINGGLYMA15G14320.41e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-77telomere repeat binding factor 1